RTPrimerDB: the real-time PCR primer and probe database

RTPrimerDB is generously sponsored by

Citations

The following 72 papers have cited RTPrimerDB as reference database for quantitative real-time PCR primers (in chronological order starting with most recent)

Alves-Costa, FA; Denovan-Wright, EM; Thisse, C; Thisse, B; Wright, JM Spatio-temporal distribution of fatty acid-binding protein 6 (fabp6) gene transcripts in the developing and adult zebrafish (Danio rerio). FEBS J. (2008)

Karanth, S; Denovan-Wright, EM; Thisse, C; Thisse, B; Wright, JM The evolutionary relationship between the duplicated copies of the zebrafish fabp11 gene and the tetrapod FABP4, FABP5, FABP8 and FABP9 genes. FEBS J. (2008)

Scharlaken, B; de Graaf, DC; Goossens, K; Brunain, M; Peelman, LJ; Jacobs, FJ Reference gene selection for insect expression studies using quantitative real-time PCR: The head of the honeybee, Apis mellifera, after a bacterial challenge. J Insect Sci. (2008)

Agis, H; Bauer, M; Knebl, G; Watzek, G; Gruber, R Effects of platelet-derived growth factor isoforms on plasminogen activation by periodontal ligament and gingival fibroblasts. J. Periodont. Res. (2008)

Rajendar, B; Nishizawa, S; Teramae, N Alloxazine as a ligand for selective binding to adenine opposite AP sites in DNA duplexes and analysis of single-nucleotide polymorphisms. Org. Biomol. Chem. (2008)

Pesce, JT; Liu, ZG; Hamed, H; Alem, F; Whitmire, J; Lin, HX; Liu, Q; Urban, JF; Gause, WC Neutrophils clear bacteria associated with parasitic nematodes augmenting the development of an effective Th2-type response. J. Immunol. (2008)

Uchida, S; Fuke, S; Tsukahara, T Upregulations of Gata4 and oxytocin receptor are important in cardiomyocyte differentiation processes of P19CL6 cells. J. Cell. Biochem. (2007)

Brooks, WM; Lynch, PJ; Ingle, CC; Hatton, A; Emson, PC; Faull, RLM; Starkey, MP Gene expression profiles of metabolic enzyme transcripts in Alzheimer's disease. Brain Res. (2007)

Cui, WW; Taub, DD; Gardner, K qPrimerDepot: a primer database for quantitative real time PCR. Nucleic Acids Res. (2007)

10.

Burgstaller, JP; Schinogl, P; Dinnyes, A; Muller, M; Steinborn, R Mitochondrial DNA heteroplasmy in ovine fetuses and sheep cloned by somatic cell nuclear transfer. BMC Dev. Biol. (2007)

11.

Painz, R; Walter, I; Kolbe, T; Rigler, D; Vogl, C; Steinborn, R; Rulicke, T; Helmreich, M; Karaghiosoff, M; Muller, M Organ-specific and differential requirement of TYK2 and IFNAR1 for LPS-induced NOS expression in vivo. Immunobiology (2007)

12.

Michels, E; Vandesompele, J; De Preter, K; Hoebeeck, J; Vermeulen, J; Schramm, A; Molenaar, JJ; Menten, B; Marques, B; Stallings, RL; Combaret, V; Devalck, C; De Paepe, A; Versteeg, R; Eggert, A; Laureys, G; Van Roy, N; Speleman, F ArrayCGH-based classification of neuroblastoma into genomic subgroups. Gene Chromosomes Cancer (2007)

13.

Schomburg, L; Riese, C; Renko, K; Schweizer, U Effect of age on sexually dimorphic selenoprotein expression in mice. Biol. Chem. (2007)

14.

van Wely, K; Meester-Smoor, MA; Janssen, MJFW; Aarnoudse, AJ; Grosveld, GC; Zwarthoff, EC The MN1-TEL myeloid leukemia-associated fusion protein has a dominant-negative effect on RAR-RXR-mediated transcription. Oncogene (2007)

15.

Kemp, CR; Willems, E; Wawrzak, D; Hendrickx, M; Agbor, TA; Leyns, L Expression of Frizzled5, Frizzled7, and Frizzled10 during early mouse development and interactions with canonical Wnt signaling. Dev. Dyn. (2007)

16.

Engler, A; Aeschlimann, A; Simmen, BR; Michel, BA; Gay, RE; Gay, S; Sprott, H Expression of transient receptor potential vanilloid 1 (TRPV1) in synovial fibroblasts from patients with osteoarthritis and rheumatoid arthritis. Biochem. Biophys. Res. Commun. (2007)

17.

Feys, T; Poppe, B; De Preter, K; Van Roy, N; Verhasselt, B; De Paepe, P; De Paepe, A; Speleman, F A detailed inventory of DNA copy number alterations in four commonly used Hodgkin's lymphoma cell lines. Haematol-Hematol. J. (2007)

18.

Toegel, S; Huang, WW; Piana, C; Unger, FM; Wirth, M; Goldring, MB; Gabor, F; Viernstein, H Selection of reliable reference genes for qPCR studies on chondroprotective action. BMC Mol. Biol. (2007)

19.

Frey, IM; Rubio-Aliaga, I; Siewert, A; Sailer, D; Drobyshev, A; Beckers, J; de Angelis, MH; Aubert, J; Bar Hen, A; Fiehn, O; Eichinger, HM; Daniel, H Profiling at mRNA, protein, and metabolite levels reveals alterations in renal amino acid handling and glutathione metabolism in kidney tissue of Pept2(-/-) mice. Physiol. Genomics (2007)

20.

Poppe, B; Dastugue, N; Vandesompele, J; Cauwelier, B; De Smet, B; Yigit, N; De Paepe, A; Cervera, J; Recher, C; De Mas, V; Hagemeijer, A; Speleman, F EVII is consistently expressed as principal transcript in common and rare recurrent 3q26 rearrangements. Gene Chromosomes Cancer (2006)

21.

Gilsbach, R; Faron-Gorecka, A; Rogoz, Z; Bruss, M; Caron, MG; Dziedzicka-Wasylewska, M; Bonisch, H Norepinephrine transporter knockout-induced up-regulation of brain alpha(2A/C)-adrenergic receptors. J. Neurochem. (2006)

22.

Micke, P; Ohshima, M; Tahmasebpoor, S; Ren, ZP; Ostman, A; Ponten, F; Botling, J Biobanking of fresh frozen tissue: RNA is stable in nonfixed surgical specimens. Lab. Invest. (2006)

23.

Van Roy, N; Vandesompele, J; Menten, B; Nilsson, H; De Smet, E; Rocchi, M; De Paepe, A; Pahlman, S; Speleman, F Translocation-excision-deletion-amplification mechanism leading to nonsyntenic coamplification of MYC and ATBF1. Gene Chromosomes Cancer (2006)

24.

Csako, G Present and future of rapid and/or high-throughput methods for nucleic acid testing. Clin. Chim. Acta (2006)

25.

Yuan, JS; Reed, A; Chen, F; Stewart, CN Statistical analysis of real-time PCR data. BMC Bioinformatics (2006)

26.

Gilsbach, R; Kouta, M; Bonisch, H; Bruss, M Comparison of in vitro and in vivo reference genes for internal standardization of real-time PCR data. Biotechniques (2006)

27.

Han, SJ; Kim, D AtRTPrimer: database for Arabidopsis genome-wide homogeneous and specific RT-PCR primer-pairs. BMC Bioinformatics (2006)

28.

Zatkova, A; Schoch, C; Speleman, F; Poppe, B; Mannhalter, C; Fonatsch, C; Wimmer, K GAB2 is a novel target of 11q amplification in AML/MDS. Gene Chromosomes Cancer (2006)

29.

Hoebeeck, J; Vandesompele, J; Nilsson, H; De Preter, K; Van Roy, N; De Smet, E; Yigit, N; De Paepe, A; Laureys, G; Pahlman, S; Speleman, F The von Hippel-Lindau tumor suppressor gene expression level has prognostic value in neuroblastoma. Int. J. Cancer (2006)

30.

Feng, HC; Tsao, SW; Ngan, HYS; Kwan, HS; Shih, SM; Xue, WC; Chiu, PM; Chan, KW; Cheung, ANY Differential gene expression identified in complete hydatidiform mole by combining suppression subtractive hybridization and cDNA microarray. Placenta (2006)

31.

Andersson, KB; Florholmen, G; Winer, LH; Tonnessen, T; Christensen, G Regulation of neuronal type genes in congestive heart failure rats. Acta Physiol. (2006)

32.

Florholmen, G; Thoresen, GH; Rustan, AC; Jensen, J; Christensen, G; Aas, V Leukaemia inhibitory factor stimulates glucose transport in isolated cardiomyocytes and induces insulin resistance after chronic exposure. Diabetologia (2006)

33.

Yuan, JS; Reed, A; Chen, F; Stewart, CN Statistical analysis of real-time PCR data. BMC Bioinformatics (2006)

34.

Burnett, R; Melander, C; Puckett, JW; Son, LS; Wells, RB; Dervan, PB; Gottesfeld, JM DNA sequence-specific polyamides alleviate transcription inhibition associated with long GAA center dot TTC repeats in Friedreich's ataxia. Proc. Natl. Acad. Sci. U. S. A. (2006)

35.

Yates, KE Identification of cis and trans-acting transcriptional regulators in chondroinduced fibroblasts from the pre-phenotypic gene expression profile. Gene (2006)

36.

Van Maerken, T; Speleman, F; Vermeulen, J; Lambertz, I; De Clercq, S; De Smet, E; Yigit, N; Coppens, V; Philippe, J; De Paepe, A; Marine, JC; Vandesompele, J Small-molecule MDM2 antagonists as a new therapy concept for neuroblastoma. Cancer Res. (2006)

37.

Alvarez, D; Chou, CJ; Latella, L; Zeitlin, SG; Ku, S; Puri, PL; Dervan, PB; Gottesfeld, JM A two-hit mechanism for pre-mitotic arrest of cancer cell proliferation by a polyamide-alkylator conjugate. Cell Cycle (2006)

38.

Willems, E; Mateizel, I; Kemp, C; Cauffman, G; Sermon, K; Leyns, L Selection of reference genes in mouse embryos and in differentiating human and mouse ES cells. Int. J. Dev. Biol. (2006)

39.

Leitner, NR; Strobl, B; Bokor, M; Painz, R; Kolbe, T; Rulicke, T; Muller, M; Karaghiosoff, M A time- and dose-dependent STAT1 expression system. BMC Biotechnol. (2006)

40.

De Preter, K; Vandesompele, J; Heimann, P; Yigit, N; Beckman, S; Schramm, A; Eggert, A; Stallings, RL; Benoit, Y; Renard, M; De Paepe, A; Laureys, G; Pahlman, S; Speleman, F Human fetal neuroblast and neuroblastoma transcriptome analysis confirms neuroblast origin and highlights neuroblastoma candidate genes. Genome Biol. (2006)

41.

Cassidy, PB; Edes, K; Nelson, CC; Parsawar, K; Fitzpatrick, FA; Moos, PJ Thioredoxin reductase is required for the inactivation of tumor suppressor p53 and for apoptosis induced by endogenous electrophiles. Carcinogenesis (2006)

42.

Enoki, T; Yoshida, Y; Lally, J; Hatta, H; Bonen, A Testosterone increases lactate transport, monocarboxylate transporter (MCT) 1 and MCT4 in rat skeletal muscle. J. Physiol.-London (2006)

43.

Martinez, FO; Gordon, S; Locati, M; Mantovani, A Transcriptional profiling of the human monocyte-to-macrophage differentiation and polarization: New molecules and patterns of gene expression. J. Immunol. (2006)

44.

Herman, D; Jenssen, K; Burnett, R; Soragni, E; Perlman, SL; Gottesfeld, JM Histone deacetylase inhibitors reverse gene silencing in Friedreich's ataxia. Nat. Chem. Biol. (2006)

45.

Wlaschin, KF; Seth, G; Hu, WS Toward genomic cell culture engineering. Cytotechnology (2006)

46.

Aranyi, T; Varadi, A; Simon, I; Tusnady, GE The BiSearch web server. BMC Bioinformatics (2006)

47.

Nolan, T; Hands, RE; Bustin, SA Quantification of mRNA using real-time RT-PCR. Nat. Protoc. (2006)

48.

Pattyn, F; Hoebeeck, J; Robbrecht, P; Michels, E; De Paepe, A; Bottu, G; Coornaert, D; Herzog, R; Speleman, F; Vandesompele, J MethBLAST and methPrimerDB: web-tools for PCR based methylation analysis. BMC Bioinformatics (2006)

49.

Pattyn, F; Robbrecht, P; De Paepe, A; Speleman, F; Vandesompele, J RTPrimerDB: the real-time PCR primer and probe database, major update 2006. Nucleic Acids Res. (2006)

50.

Revilla-Fernandez, S; Wallner, B; Truschner, K; Benczak, A; Brem, G; Schmoll, F; Mueller, M; Steinborn, R The use of endogenous and exogenous reference RNAs for qualitative and quantitative detection of PRRSV in porcine semen. J. Virol. Methods (2005)

51.

Boniface, K; Bernard, FX; Garcia, M; Gurney, AL; Lecron, JC; Morel, F IL-22 inhibits epidermal differentiation and induces proinflammatory gene expression and migration of human keratinocytes. J. Immunol. (2005)

52.

Speleman, F; Cauwelier, B; Dastugue, N; Cools, J; Verhasselt, B; Poppe, B; Van Roy, N; Vandesompele, J; Graux, C; Uyttebroeck, A; Boogaerts, M; De Moerloose, B; Benoit, Y; Selleslag, D; Billiet, J; Robert, A; Huguet, F; Vandenberghe, P; De Paepe, A; Marynen, P; Hagemeijer, A A new recurrent inversion, inv(7)(p15q34), leads to transcriptional activation of HOXA10 and HOXA11 in a subset of T-cell acute lymphoblastic leukemias. Leukemia (2005)

53.

Hoebeeck, J; van der Luijt, R; Poppe, B; De Smet, E; Yigit, N; Claes, K; Zewald, R; de Jong, GJ; De Paepe, A; Speleman, F; Vandesompele, J Rapid detection of VHL exon deletions using real-time quantitative PCR. Lab. Invest. (2005)

54.

Kemp, C; Willems, E; Abdo, S; Lambiv, L; Leyns, L Expression of all Wnt genes and their secreted antagonists during mouse blastocyst and postimplantation development. Dev Dyn. (2005)

55.

Matsumura, Y; Shimokawa, K; Hayashizaki, Y; Ikeo, K; Tateno, Y; Kawai, J Development of a spot reliability evaluation score for DNA microarrays. Gene (2005)

56.

Perez-Novo, CA; Claeys, C; Speleman, F; Van Cauwenberge, P; Bachert, C; Vandesompele, J Impact of RNA quality on reference gene expression stability. Biotechniques (2005)

57.

De Preter, K; Vandesompele, J; Menten, B; Carr, P; Fiegler, H; Edsjo, A; Carter, NP; Yigit, N; Waelput, W; Van Roy, N; Bader, S; Pahlman, S; Speleman, F Positional and functional mapping of a neuroblastoma differentiation gene on chromosome II. BMC Genomics (2005)

58.

Feng, HC; Tsao, SW; Ngan, HYS; Xue, WC; Chiu, PM; Cheung, ANY Differential expression of insulin-like growth factor binding protein 1 and ferritin light polypeptide in gestational trophoblastic neoplasia - Combined cDNA suppression subtractive hybridization and microarray study. Cancer (2005)

59.

Fox, SA; Kusmiaty; Loh, SSW; Dharmarajan, AM; Garlepp, MJ Cisplatin and TNF-alpha downregulate transcription of Bcl-xL in murine malignant mesothelioma cells. Biochem. Biophys. Res. Commun. (2005)

60.

Strobl, B; Bubic, I; Bruns, U; Steinborn, R; Lajko, R; Kolbe, T; Karaghiosoff, M; Kalinke, U; Jonjic, S; Muller, M Novel functions of tyrosine kinase 2 in the antiviral defense against murine cytomegalovirus. J. Immunol. (2005)

61.

Dickinson, LA; Burnett, R; Melander, C; Edelson, BS; Arora, PS; Dervan, PB; Gottesfeld, JM Arresting cancer proliferation by small-molecule gene regulation. Chem. Biol. (2004)

62.

Hellemans, J; Preobrazhenska, O; Willaert, A; Debeer, P; Verdonk, PCM; Costa, T; Janssens, K; Menten, B; Van Roy, N; Vermeulen, SJT; Savarirayan, R; Van Hul, W; Vanhoenacker, F; Huylebroeck, D; De Paepe, A; Naeyaert, JM; Vandesompele, J; Speleman, F; Verschueren, K; Coucke, PJ; Mortier, GR Loss-of-function mutations in LEMD3 result in osteopoikilosis, Buschke-Ollendorff syndrome and melorheostosis. Nature Genet. (2004)

63.

Kuipers, H; Heirman, C; Hijdra, D; Muskens, F; Willart, M; van Meirvenne, S; Thielemans, K; Hoogsteden, HC; Lambrecht, BN Dendritic cells retrovirally overexpressing IL-12 induce strong Th1 responses to inhaled antigen in the lung but fail to revert established Th2 sensitization. J. Leukoc. Biol. (2004)

64.

Brazeau, DA Combining genome-wide and targeted gene expression profiling in drug discovery: microarrays and real-time PCR. Drug Discov. Today (2004)

65.

Moos, PJ; Edes, K; Mullally, JE; Fitzpatrick, FA Curcumin impairs tumor suppressor p53 function in colon cancer cells. Carcinogenesis (2004)

66.

Zipper, H; Brunner, H; Bernhagen, J; Vitzthum, F Investigations on DNA intercalation and surface binding by SYBR Green I, its structure determination and methodological implications. Nucleic Acids Res. (2004)

67.

Edsjo, A; Nilsson, H; Vandesompele, J; Karlsson, J; Pattyn, F; Culp, LA; Speleman, F; Pahlman, S Neuroblastoma cells with overexpressed MYCN retain their capacity to undergo neuronal differentiation. Lab. Invest. (2004)

68.

Van Gele, M; Boyle, GM; Cook, AL; Vandesompele, J; Boonefaes, T; Rottiers, P; Van Roy, N; De Paepe, A; Parsons, PG; Leonard, JH; Speleman, F Gene-expression profiling reveals distinct expression patterns for classic versus variant Merkel cell phenotypes and new classifier genes to distinguish Merkel cell from small-cell lung carcinoma. Oncogene (2004)

69.

De Preter, K; Pattyn, F; Berx, G; Strumane, K; Menten, B; Van Roy, F; De Paepe, A; Speleman, F; Vandesompele, J Combined subtractive cDNA cloning and array CGH: an efficient approach for identification of overexpressed genes in DNA amplicons. BMC Genomics (2004)

70.

Poppe, B; Vandesompele, J; Schoch, C; Lindvall, C; Mrozek, K; Bloomfield, CD; Beverloo, HB; Michaux, L; Dastugue, N; Herens, C; Yigit, N; De Paepe, A; Hagemeijer, A; Speleman, F Expression analyses identify MLL as a prominent target of 11q23 amplification and support an etiologic role for MLL gain of function in myeloid malignancies. Blood (2004)

71.

Wang, XW; Seed, B A PCR primer bank for quantitative gene expression analysis. Nucleic Acids Res. (2003)

72.

Dudouet, B; Burnett, R; Dickinson, LA; Wood, MR; Melander, C; Belitsky, JM; Edelson, B; Wurtz, N; Briehn, C; Dervan, PB; Gottesfeld, JM Accessibility of nuclear chromatin by DNA binding polyamides. Chem. Biol. (2003)